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Bra003273 protein (Brassica rapa) - STRING interaction network
"Bra003273" - AT3G57240 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003273AT3G57240 (E=1e-138) BG3 | BG3 (BETA-1,3-GLUCANASE 3); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (339 aa)    
Predicted Functional Partners:
Bra031771
AT1G11580 (E=2e-238) ATPMEPCRA, PMEPCRA | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (452 aa)
           
  0.457
Bra033314
AT1G02335 (E=1e-099) GL22 | GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.); manganese ion binding / nutrient reservoir (218 aa)
           
  0.454
Bra031671
AT1G09560 (E=2e-105) GLP5 | GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir (216 aa)
           
  0.454
Bra030785
AT1G09560 (E=1e-104) GLP5 | GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir (220 aa)
           
  0.454
Bra020014
AT1G09560 (E=9e-108) GLP5 | GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / nutrient reservoir (223 aa)
           
  0.454
Bra007652
AT3G62020 (E=6e-117) GLP10 | GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / nutrient reservoir (220 aa)
           
  0.454
Bra037319
AT4G00150 (E=4e-183) | scarecrow-like transcription factor 6 (SCL6) (562 aa)
           
  0.453
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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