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Bra003286 protein (Brassica rapa) - STRING interaction network
"Bra003286" - AT3G57510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003286AT3G57510 (E=9e-210) ADPG1 | ADPG1; polygalacturonase (433 aa)    
Predicted Functional Partners:
Bra035579
AT5G55590 (E=2e-150) QRT1 | QRT1 (QUARTET 1); pectinesterase (378 aa)
       
  0.953
Bra002891
AT5G55590 (E=1e-097) QRT1 | QRT1 (QUARTET 1); pectinesterase (409 aa)
       
  0.953
Bra040563
AT1G53830 (E=1e-282) ATPME2 | ATPME2; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (585 aa)
       
  0.933
Bra039419
AT3G05620 (E=3e-267) | pectinesterase family protein (539 aa)
       
  0.933
Bra036280
AT4G02300 (E=2e-193) | pectinesterase family protein (522 aa)
       
  0.933
Bra036279
AT4G02320 (E=2e-214) | pectinesterase family protein (516 aa)
       
  0.933
Bra036278
AT4G02330 (E=6e-295) ATPMEPCRB | ATPMEPCRB; pectinesterase (572 aa)
       
  0.933
Bra033083
AT3G29090 (E=1e-184) PME31, ATPME31 | pectinesterase family protein (317 aa)
       
  0.933
Bra030511
AT1G02810 (E=8e-308) | pectinesterase family protein (576 aa)
       
  0.933
Bra027350
AT3G14310 (E=5e-294) ATPME3 | ATPME3; pectinesterase ; Acts in the modification of cell walls via demethylesterification of cell wall pectin (592 aa)
       
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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