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Bra003305 protein (Brassica rapa) - STRING interaction network
"Bra003305" - AT3G57920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003305AT3G57920 (E=5e-106) SPL15 | SPL15 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15); DNA binding / transcription factor (316 aa)    
Predicted Functional Partners:
Bra036721
AT2G19470 (E=6e-219) ckl5 | ckl5 (Casein Kinase I-like 5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (437 aa)
           
  0.468
Bra036426
AT3G03940 (E=0.0) | protein kinase family protein (704 aa)
           
  0.468
Bra035974
AT5G43320 (E=8e-249) ckl8 | ckl8 (Casein Kinase I-like 8); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (475 aa)
           
  0.468
Bra035646
AT5G57015 (E=1e-176) ckl12 | ckl12 (Casein Kinase I-like 12); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (360 aa)
           
  0.468
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
           
  0.468
Bra032536
AT5G44100 (E=2e-184) ckl7 | ckl7 (Casein Kinase I-like 7); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (455 aa)
           
  0.468
Bra032511
AT1G04440 (E=1e-230) CKL13 | CKL13 (CASEIN KINASE LIKE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (467 aa)
           
  0.468
Bra032510
AT1G04440 (E=2e-021) CKL13 | CKL13 (CASEIN KINASE LIKE 13); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (286 aa)
           
  0.468
Bra032509
AT1G04445 (E=1e-012) | zinc finger (C2H2 type) family protein (153 aa)
           
  0.468
Bra031961
AT3G03940 (E=0.0) | protein kinase family protein (802 aa)
           
  0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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