STRINGSTRING
Bra003321 protein (Brassica rapa) - STRING interaction network
"Bra003321" - AT3G58130 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003321AT3G58130 (E=3e-125) | N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related (256 aa)    
Predicted Functional Partners:
Bra009589
AT3G45100 (E=2e-218) SETH2 | SETH2; transferase, transferring glycosyl groups (429 aa)
 
 
  0.970
Bra007308
AT3G57170 (E=1e-217) | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (685 aa)
     
 
  0.946
Bra005040
AT2G39445 (E=2e-081) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- PIG-P (InterPro-IPR013717), Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (InterPro-IPR016542); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G61280.1); Has 228 Blast hits to 228 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 60; Plants - 24; Viruses - 0; Other Eukaryotes - 38 (source- NCBI BLink). (172 aa)
         
  0.939
Bra000387
AT4G17910 (E=3e-190) | transferase, transferring acyl groups (451 aa)
     
 
  0.935
Bra015919
AT1G74340 (E=1e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
         
  0.933
Bra008145
AT1G74340 (E=3e-033) | dolichol phosphate-mannose biosynthesis regulatory protein-related (80 aa)
         
  0.933
Bra005376
AT2G34980 (E=4e-112) SETH1 | SETH1; phosphatidylinositol N-acetylglucosaminyltransferase/ transferase (312 aa)
         
  0.933
Bra017719
AT4G35530 (E=3e-085) | phosphatidylinositolglycan-related (194 aa)
         
  0.902
Bra011621
AT4G35530 (E=1e-084) | phosphatidylinositolglycan-related (194 aa)
         
  0.902
Bra028873
AT3G45100 (E=2e-041) SETH2 | SETH2; transferase, transferring glycosyl groups (249 aa)
 
 
  0.863
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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