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Bra003323 protein (Brassica rapa) - STRING interaction network
"Bra003323" - AT2G46450 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003323AT2G46450 (E=5e-181) ATCNGC12, CNGC12 | ATCNGC12; cation channel/ cyclic nucleotide binding / ion channel (666 aa)    
Predicted Functional Partners:
Bra008658
AT1G72550 (E=3e-287) | tRNA synthetase beta subunit family protein (592 aa)
   
  0.996
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.996
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.996
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
0.993
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
0.993
Bra007498
AT3G59980 (E=6e-107) | tRNA-binding region domain-containing protein (270 aa)
   
  0.979
Bra004583
AT2G40660 (E=1e-148) | tRNA-binding region domain-containing protein (382 aa)
   
  0.979
Bra036596
AT5G26830 (E=0.0) | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (707 aa)
   
 
  0.803
Bra031021
AT5G26830 (E=9e-149) | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (577 aa)
   
 
  0.803
Bra031009
AT5G26830 (E=3e-071) | threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) (373 aa)
   
 
  0.803
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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