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Bra003325 protein (Brassica rapa) - STRING interaction network
"Bra003325" - AT3G58170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003325AT3G58170 (E=5e-044) ATBS14A, ATBET11, BET11, BS14A | BS14A (BET1P/SFT1P-LIKE PROTEIN 14A); SNAP receptor/ protein transporter (117 aa)    
Predicted Functional Partners:
Bra005233
AT2G36900 (E=2e-100) MEMB11, ATMEMB11 | MEMB11 (MEMBRIN 11); SNAP receptor (226 aa)
     
  0.986
Bra031788
AT1G11890 (E=4e-121) SEC22, ATSEC22 | SEC22; transporter (479 aa)
     
  0.979
Bra029128
AT5G52270 (E=8e-077) | vesicle transport protein-related (195 aa)
     
  0.979
Bra019723
AT1G11890 (E=3e-119) SEC22, ATSEC22 | SEC22; transporter (225 aa)
     
  0.979
Bra016806
AT1G11890 (E=8e-122) SEC22, ATSEC22 | SEC22; transporter (218 aa)
     
  0.979
Bra027335
AT5G58060 (E=1e-022) YKT61, ATYKT61, ATGP1 | YKT61 (120 aa)
     
  0.978
Bra020394
AT5G58060 (E=2e-106) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)
     
  0.978
Bra020383
AT5G58060 (E=1e-082) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)
     
  0.978
Bra002675
AT5G58060 (E=8e-107) YKT61, ATYKT61, ATGP1 | YKT61 (199 aa)
     
  0.978
Bra032848
AT5G05760 (E=1e-019) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (108 aa)
     
  0.977
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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