STRINGSTRING
Bra003326 protein (Brassica rapa) - STRING interaction network
"Bra003326" - AT3G58180 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003326AT3G58180 (E=7e-074) | PBS lyase HEAT-like repeat-containing protein (297 aa)    
Predicted Functional Partners:
Bra012447
AT1G26665 (E=5e-080) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; BEST Arabidopsis thaliana protein match is- RNA polymerase II mediator complex protein-related (TAIR-AT5G41910.1); Has 223 Blast hits to 223 proteins in 105 species- Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 83; Plants - 24; Viruses - 0; Other Eukaryotes - 4 (source- NCBI BLink). (513 aa)
     
  0.883
Bra024702
AT1G26630 (E=2e-077) FBR12, ATELF5A-2, ELF5A-2 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor (159 aa)
     
  0.876
Bra016282
AT1G26630 (E=4e-078) FBR12, ATELF5A-2, ELF5A-2 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor (159 aa)
     
  0.876
Bra004379
AT1G69410 (E=2e-086) ATELF5A-3, ELF5A-3 | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor (158 aa)
     
  0.876
Bra028490
AT5G41190 (E=2e-118) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nin one binding (NOB1) Zn-ribbon like (InterPro-IPR014881), D-site 20S pre-rRNA nuclease (InterPro-IPR017117); Has 855 Blast hits to 653 proteins in 196 species- Archae - 53; Bacteria - 16; Metazoa - 335; Fungi - 168; Plants - 29; Viruses - 10; Other Eukaryotes - 244 (source- NCBI BLink). (576 aa)
     
        0.855
Bra025513
AT5G41190 (E=2e-127) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Nin one binding (NOB1) Zn-ribbon like (InterPro-IPR014881), D-site 20S pre-rRNA nuclease (InterPro-IPR017117); Has 855 Blast hits to 653 proteins in 196 species- Archae - 53; Bacteria - 16; Metazoa - 335; Fungi - 168; Plants - 29; Viruses - 10; Other Eukaryotes - 244 (source- NCBI BLink). (573 aa)
     
        0.855
Bra040681
AT2G19540 (E=1e-087) | transducin family protein / WD-40 repeat family protein (362 aa)
     
        0.851
Bra031087
AT2G19540 (E=3e-091) | transducin family protein / WD-40 repeat family protein (271 aa)
     
        0.851
Bra006708
AT2G19540 (E=4e-013) | transducin family protein / WD-40 repeat family protein (133 aa)
     
        0.851
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
        0.849
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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