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Bra003333 protein (Brassica rapa) - STRING interaction network
"Bra003333" - AT1G56145 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003333AT1G56145 (E=0.0) | leucine-rich repeat family protein / protein kinase family protein (1004 aa)    
Predicted Functional Partners:
Bra014273
AT1G51310 (E=7e-240) | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (486 aa)
           
  0.487
Bra002673
AT5G58090 (E=9e-251) | glycosyl hydrolase family 17 protein (480 aa)
           
  0.476
Bra027240
AT3G15480 (E=2e-075) | unknown protein (175 aa)
           
  0.472
Bra037400
AT1G43245 (E=2e-168) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; CONTAINS InterPro DOMAIN/s- SET (InterPro-IPR001214); Has 432 Blast hits to 430 proteins in 119 species- Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 80; Plants - 47; Viruses - 3; Other Eukaryotes - 90 (source- NCBI BLink). (558 aa)
           
  0.455
Bra027757
AT1G64090 (E=2e-096) | reticulon family protein (RTNLB3) (250 aa)
           
  0.406
Bra027678
AT1G64090 (E=6e-103) | reticulon family protein (RTNLB3) (251 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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