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Bra003339 protein (Brassica rapa) - STRING interaction network
"Bra003339" - AT3G58490 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003339AT3G58490 (E=1e-214) | phosphatidic acid phosphatase family protein / PAP2 family protein (411 aa)    
Predicted Functional Partners:
Bra020895
AT4G21540 (E=2e-124) SPHK1 | SPHK1 (SPHINGOSINE KINASE 1); D-erythro-sphingosine kinase/ diacylglycerol kinase/ sphinganine kinase (453 aa)
     
  0.925
Bra010909
AT1G27980 (E=4e-287) DPL1, ATDPL1 | DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding (544 aa)
     
  0.907
Bra019665
AT1G14290 (E=5e-143) SBH2 | SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase (261 aa)
       
  0.902
Bra007872
AT1G69640 (E=2e-134) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (259 aa)
       
  0.902
Bra004404
AT1G69640 (E=3e-125) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (261 aa)
       
  0.902
Bra026898
AT1G13580 (E=1e-175) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (308 aa)
       
  0.895
Bra026522
AT1G13580 (E=3e-143) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (304 aa)
       
  0.895
Bra016115
AT1G69640 (E=9e-069) SBH1 | SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase (248 aa)
       
  0.879
Bra026621
AT2G02010 (E=2e-271) GAD4 | GAD4 (glutamate decarboxylase 4); calmodulin binding (493 aa)
     
  0.867
Bra023612
AT5G17330 (E=1e-241) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase (472 aa)
     
  0.867
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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