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Bra003341 protein (Brassica rapa) - STRING interaction network
"Bra003341" - AT3G58510 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003341AT3G58510 (E=5e-262) | DEAD box RNA helicase, putative (RH11) (610 aa)    
Predicted Functional Partners:
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
     
 
  0.922
Bra034208
AT4G03430 (E=0.0) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (1015 aa)
     
 
  0.909
Bra034571
AT4G03430 (E=4e-285) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (962 aa)
     
 
  0.909
Bra000824
AT4G03430 (E=1e-194) STA1, EMB2770 | EMB2770 (EMBRYO DEFECTIVE 2770); RNA splicing factor, transesterification mechanism (574 aa)
     
 
  0.909
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
      0.909
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
      0.909
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
      0.909
Bra020542
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (945 aa)
     
      0.908
Bra017279
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (878 aa)
     
      0.908
Bra010782
AT1G56070 (E=0.0) LOS1 | LOS1; copper ion binding / translation elongation factor/ translation factor, nucleic acid binding (843 aa)
     
      0.908
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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