STRINGSTRING
Bra003346 protein (Brassica rapa) - STRING interaction network
"Bra003346" - AT3G58630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003346AT3G58630 (E=2e-089) | transcription factor (306 aa)    
Predicted Functional Partners:
Bra024329
AT5G64813 (E=6e-137) LIP1 | LIP1 (Light Insensitive Period1); GTPase (373 aa)
       
      0.909
Bra037797
AT5G64813 (E=8e-160) LIP1 | LIP1 (Light Insensitive Period1); GTPase (342 aa)
       
      0.906
Bra010996
AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator (588 aa)
       
      0.489
Bra022686
AT5G53970 (E=3e-134) | aminotransferase, putative (397 aa)
           
  0.418
Bra020025
AT1G09390 (E=8e-190) | GDSL-motif lipase/hydrolase family protein (371 aa)
           
  0.408
Bra010135
AT5G62930 (E=3e-134) | GDSL-motif lipase/hydrolase family protein (243 aa)
           
  0.408
Bra008757
AT5G14450 (E=4e-206) | GDSL-motif lipase/hydrolase family protein (389 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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