STRINGSTRING
Bra003348 protein (Brassica rapa) - STRING interaction network
"Bra003348" - AT3G58650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003348AT3G58650 (E=3e-307) | unknown protein (803 aa)    
Predicted Functional Partners:
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
           
  0.505
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
           
  0.505
Bra040992
AT1G36310 (E=3e-165) | methyltransferase (353 aa)
           
  0.487
Bra038427
AT1G31600 (E=2e-159) | oxidoreductase, 2OG-Fe(II) oxygenase family protein (349 aa)
           
  0.474
Bra005408
AT1G36310 (E=6e-103) | methyltransferase (315 aa)
           
  0.474
Bra007599
AT3G61380 (E=3e-119) | unknown protein (629 aa)
           
  0.456
Bra003143
AT3G53540 (E=1e-211) | unknown protein (891 aa)
           
  0.456
Bra011058
AT4G28760 (E=3e-208) | unknown protein (837 aa)
           
  0.416
Bra010062
AT5G62170 (E=5e-249) | unknown protein (706 aa)
           
  0.416
Bra002072
AT2G17550 (E=3e-314) | unknown protein (768 aa)
           
  0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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