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Bra003358 protein (Brassica rapa) - STRING interaction network
"Bra003358" - AT3G58830 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003358AT3G58830 (E=2e-141) | haloacid dehalogenase (HAD) superfamily protein (336 aa)    
Predicted Functional Partners:
Bra029521
AT4G04870 (E=2e-107) CLS | CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase (330 aa)
         
  0.904
Bra014779
AT3G55030 (E=8e-102) PGPS2 | PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (234 aa)
         
  0.904
Bra003205
AT3G55030 (E=5e-095) PGPS2 | PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (217 aa)
         
  0.904
Bra000127
AT2G39290 (E=1e-110) PGPS1, PGP1, PGS1 | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase (301 aa)
         
  0.904
Bra039323
AT2G45670 (E=3e-255) | calcineurin B subunit-related (531 aa)
       
    0.898
Bra022365
AT3G18850 (E=8e-182) LPAT5 | LPAT5; acyltransferase (346 aa)
       
    0.898
Bra008174
AT1G75020 (E=6e-172) LPAT4 | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (382 aa)
       
    0.898
Bra003775
AT1G75020 (E=3e-171) LPAT4 | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4); acyltransferase (380 aa)
       
    0.898
Bra000394
AT2G45670 (E=1e-252) | calcineurin B subunit-related (527 aa)
       
    0.898
Bra018153
AT3G47390 (E=5e-292) | cytidine/deoxycytidylate deaminase family protein (587 aa)
   
 
    0.893
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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