STRINGSTRING
Bra003361 protein (Brassica rapa) - STRING interaction network
"Bra003361" - AT3G59030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003361AT3G59030 (E=7e-251) TT12, ATTT12 | TT12 (TRANSPARENT TESTA 12); antiporter/ solute-hydrogen antiporter/ transmembrane transporter/ transporter (507 aa)    
Predicted Functional Partners:
Bra008347
AT1G78130 (E=4e-226) UNE2 | UNE2 (unfertilized embryo sac 2); carbohydrate transmembrane transporter/ sugar-hydrogen symporter (474 aa)
         
  0.613
Bra023602
AT5G17220 (E=8e-105) ATGSTF12, GST26, TT19 | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12); glutathione transferase (215 aa)
     
   
  0.603
Bra008570
AT5G17220 (E=4e-094) ATGSTF12, GST26, TT19 | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12); glutathione transferase (213 aa)
     
   
  0.603
Bra035532
AT5G35550 (E=1e-098) TT2, ATMYB123, MYB123, ATTT2 | TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor (260 aa)
     
   
  0.596
Bra016610
AT1G17260 (E=0.0) AHA10 | AHA10 (Autoinhibited H(+)-ATPase isoform 10); ATPase/ ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / cation-transporting ATPase (944 aa)
     
   
  0.595
Bra021318
AT1G61720 (E=7e-151) BAN | BAN (BANYULS); oxidoreductase (345 aa)
   
   
  0.585
Bra028594
AT5G10190 (E=1e-224) | transporter-related (494 aa)
         
  0.579
Bra037887
AT4G09820 (E=1e-114) TT8 | TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor (497 aa)
     
   
  0.567
Bra028067
AT1G34790 (E=9e-111) TT1 | TT1 (transparent testa 1); transcription factor (287 aa)
     
   
  0.567
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
           
  0.563
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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