STRINGSTRING
Bra003366 protein (Brassica rapa) - STRING interaction network
"Bra003366" - AT4G37950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003366AT4G37950 (E=9e-255) | lyase (860 aa)    
Predicted Functional Partners:
Bra033740
AT5G44360 (E=3e-261) | FAD-binding domain-containing protein (547 aa)
           
  0.606
Bra014885
AT1G30710 (E=5e-261) | FAD-binding domain-containing protein (531 aa)
           
  0.606
Bra012613
AT4G18180 (E=4e-184) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (794 aa)
           
  0.574
Bra028530
AT1G01980 (E=4e-256) ATSEC1A, SEC1A | ATSEC1A; FAD binding / catalytic/ electron carrier/ oxidoreductase (537 aa)
           
  0.551
Bra027555
AT5G44410 (E=2e-235) | FAD-binding domain-containing protein (533 aa)
           
  0.551
Bra022928
AT2G33160 (E=2e-189) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (407 aa)
           
  0.504
Bra023123
AT1G30710 (E=1e-165) | FAD-binding domain-containing protein (512 aa)
           
  0.483
Bra013938
AT4G25980 (E=1e-158) | cationic peroxidase, putative ; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress (326 aa)
           
  0.471
Bra036842
AT3G50990 (E=4e-145) | electron carrier/ heme binding / peroxidase (337 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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