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Bra003372 protein (Brassica rapa) - STRING interaction network
"Bra003372" - AT3G59320 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003372AT3G59320 (E=1e-137) | integral membrane protein, putative (337 aa)    
Predicted Functional Partners:
Bra000374
AT2G45150 (E=4e-161) | phosphatidate cytidylyltransferase family protein (632 aa)
     
 
  0.633
Bra025641
AT1G02520 (E=1e-034) PGP11 | PGP11 (P-GLYCOPROTEIN 11); ATPase, coupled to transmembrane movement of substances (208 aa)
     
 
  0.593
Bra040475
AT2G47000 (E=0.0) MDR4, PGP4, ABCB4, ATPGP4 | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase (1287 aa)
       
 
  0.582
Bra039369
AT3G13090 (E=0.0) ATMRP8, ATABCC6 | ATMRP8; ATPase, coupled to transmembrane movement of substances (1437 aa)
       
 
  0.582
Bra039368
AT3G13080 (E=0.0) ATMRP3, MRP3 | ATMRP3; ATPase, coupled to transmembrane movement of substances / chlorophyll catabolite transporter/ glutathione S-conjugate-exporting ATPase (1477 aa)
       
 
  0.582
Bra039348
AT3G13090 (E=0.0) ATMRP8, ATABCC6 | ATMRP8; ATPase, coupled to transmembrane movement of substances (1463 aa)
       
 
  0.582
Bra039056
AT3G28380 (E=2e-140) PGP17 | PGP17 (P-GLYCOPROTEIN 17); ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding (690 aa)
       
 
  0.582
Bra039055
AT3G28415 (E=0.0) | P-glycoprotein, putative (1415 aa)
       
 
  0.582
Bra039042
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (1252 aa)
       
 
  0.582
Bra036682
AT1G04120 (E=0.0) ATMRP5, MRP5 | ATMRP5; ATPase, coupled to transmembrane movement of substances / sulfonylurea receptor (1439 aa)
       
 
  0.582
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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