STRINGSTRING
Bra003378 protein (Brassica rapa) - STRING interaction network
"Bra003378" - AT3G59480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003378AT3G59480 (E=1e-166) | pfkB-type carbohydrate kinase family protein (326 aa)    
Predicted Functional Partners:
Bra036653
AT1G62660 (E=0.0) | beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (655 aa)
       
  0.941
Bra033419
AT3G52600 (E=3e-314) AtcwINV2 | AtcwINV2 (Arabidopsis thaliana cell wall invertase 2); hydrolase, hydrolyzing O-glycosyl compounds (592 aa)
       
  0.941
Bra027397
AT3G13790 (E=0.0) ATCWINV1, ATBFRUCT1 | ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (580 aa)
       
  0.941
Bra027030
AT1G62660 (E=0.0) | beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (654 aa)
       
  0.941
Bra026984
AT1G12240 (E=6e-296) ATBETAFRUCT4, VAC-INV | ATBETAFRUCT4; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (690 aa)
       
  0.941
Bra023053
AT2G36190 (E=7e-306) AtcwINV4 | AtcwINV4 (Arabidopsis thaliana cell wall invertase 4); hydrolase, hydrolyzing O-glycosyl compounds (587 aa)
       
  0.941
Bra021508
AT3G13790 (E=0.0) ATCWINV1, ATBFRUCT1 | ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (579 aa)
       
  0.941
Bra019749
AT1G12240 (E=0.0) ATBETAFRUCT4, VAC-INV | ATBETAFRUCT4; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (662 aa)
       
  0.941
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
     
  0.932
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]