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Bra003381 protein (Brassica rapa) - STRING interaction network
"Bra003381" - AT2G43460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003381AT2G43460 (E=4e-018) | 60S ribosomal protein L38 (RPL38A) (73 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
  0.999
Bra001719
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Bra022351.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Bra003662
AT1G77940 (E=8e-060) | 60S ribosomal protein L30 (RPL30B) (112 aa)
     
  0.999
Bra001719.1-P
AT1G36240 (E=2e-059) | 60S ribosomal protein L30 (RPL30A) (112 aa)
     
  0.999
Bra017170
AT3G53740 (E=9e-054) | 60S ribosomal protein L36 (RPL36B) (112 aa)
     
  0.998
Bra005180
AT3G53740 (E=8e-055) | 60S ribosomal protein L36 (RPL36B) (112 aa)
     
  0.998
Bra003155
AT3G53740 (E=1e-055) | 60S ribosomal protein L36 (RPL36B) (112 aa)
     
  0.998
Bra000009
AT3G53740 (E=2e-053) | 60S ribosomal protein L36 (RPL36B) (218 aa)
     
  0.998
Bra017070
AT2G39460 (E=2e-054) ATRPL23A, RPL23A, RPL23AA | RPL23AA (RIBOSOMAL PROTEIN L23AA); RNA binding / nucleotide binding / structural constituent of ribosome (154 aa)
     
  0.998
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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