STRINGSTRING
Bra003382 protein (Brassica rapa) - STRING interaction network
"Bra003382" - AT3G59580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003382AT3G59580 (E=0.0) | RWP-RK domain-containing protein (885 aa)    
Predicted Functional Partners:
Bra024627
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (872 aa)
           
  0.528
Bra012393
AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter (874 aa)
           
  0.528
Bra032396
AT1G30510 (E=2e-201) ATRFNR2 | ATRFNR2 (ROOT FNR 2); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (418 aa)
           
  0.453
Bra031528
AT1G60070 (E=9e-057) | binding / clathrin binding / protein binding / protein transporter (218 aa)
           
  0.453
Bra024739
AT1G31730 (E=1e-100) | epsilon-adaptin, putative (263 aa)
           
  0.453
Bra023199
AT1G31730 (E=0.0) | epsilon-adaptin, putative (938 aa)
           
  0.453
BrIPT5
AT5G19040 (E=1e-156) ATIPT5, IPT5 | IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (331 aa)
           
  0.416
Bra002204
AT5G19040 (E=4e-160) ATIPT5, IPT5 | IPT5; ATP binding / tRNA isopentenyltransferase/ transferase, transferring alkyl or aryl (other than methyl) groups (334 aa)
           
  0.416
Bra029574
AT4G05390 (E=2e-189) ATRFNR1 | ATRFNR1 (ROOT FNR 1); FAD binding / NADP or NADPH binding / electron carrier/ ferredoxin-NADP+ reductase/ oxidoreductase (378 aa)
           
  0.416
Bra010908
AT1G28050 (E=5e-162) | zinc finger (B-box type) family protein (418 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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