STRINGSTRING
Bra003384 protein (Brassica rapa) - STRING interaction network
"Bra003384" - AT3G59660 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003384AT3G59660 (E=3e-312) | C2 domain-containing protein / GRAM domain-containing protein (592 aa)    
Predicted Functional Partners:
Bra032272
AT1G49050 (E=5e-192) | aspartyl protease family protein (539 aa)
     
   
  0.674
Bra004553
AT2G46240 (E=2e-105) BAG6, ATBAG6 | BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding (671 aa)
           
  0.479
Bra014420
AT3G61820 (E=2e-204) | aspartyl protease family protein (483 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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