STRINGSTRING
Bra003396 protein (Brassica rapa) - STRING interaction network
"Bra003396" - AT3G59960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003396AT3G59960 (E=2e-067) ASHH4, SDG24 | ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4); histone-lysine N-methyltransferase (259 aa)    
Predicted Functional Partners:
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
       
  0.873
Bra041121
AT3G20740 (E=1e-011) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (71 aa)
     
  0.793
Bra035751
AT3G20740 (E=2e-183) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (379 aa)
     
  0.793
Bra035750
AT3G20740 (E=2e-094) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (298 aa)
     
  0.793
Bra035748
AT3G20740 (E=1e-150) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (379 aa)
     
  0.793
Bra023933
AT3G20740 (E=3e-209) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator (369 aa)
     
  0.793
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
     
  0.756
Bra023908
AT3G21060 (E=3e-262) | transducin family protein / WD-40 repeat family protein (547 aa)
     
  0.754
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
   
  0.750
Bra037051
AT4G32551 (E=0.0) LUG, RON2 | LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (913 aa)
     
  0.733
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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