STRINGSTRING
Bra003400 protein (Brassica rapa) - STRING interaction network
"Bra003400" - AT3G60090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003400AT3G60090 (E=9e-060) | VQ motif-containing protein (281 aa)    
Predicted Functional Partners:
Bra010608
AT4G37710 (E=4e-038) | VQ motif-containing protein (114 aa)
       
 
  0.567
Bra039937
AT2G22880 (E=7e-024) | VQ motif-containing protein (138 aa)
       
 
  0.518
Bra014594
AT3G58000 (E=1e-048) | VQ motif-containing protein (177 aa)
           
  0.497
Bra025892
AT1G21320 (E=8e-051) | nucleic acid binding / nucleotide binding (230 aa)
           
  0.479
Bra035182
AT1G80450 (E=7e-047) | VQ motif-containing protein (167 aa)
           
  0.451
Bra008473
AT1G80450 (E=5e-067) | VQ motif-containing protein (164 aa)
           
  0.451
Bra007373
AT3G58000 (E=4e-057) | VQ motif-containing protein (181 aa)
           
  0.451
Bra003566
AT1G80450 (E=7e-063) | VQ motif-containing protein (173 aa)
           
  0.451
Bra037588
AT3G18360 (E=5e-041) | VQ motif-containing protein (287 aa)
           
  0.448
Bra033934
AT1G68450 (E=2e-041) | VQ motif-containing protein (137 aa)
           
  0.448
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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