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Bra003402 protein (Brassica rapa) - STRING interaction network
"Bra003402" - AT3G60160 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003402AT3G60160 (E=0.0) ATMRP9 | ATMRP9; ATPase, coupled to transmembrane movement of substances (1494 aa)    
Predicted Functional Partners:
Bra030752
AT1G09020 (E=1e-112) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (379 aa)
   
  0.940
Bra031654
AT1G09020 (E=8e-252) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (488 aa)
   
  0.931
Bra018586
AT1G09020 (E=2e-119) SNF4, ATSNF4 | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4); protein kinase activator (439 aa)
   
  0.931
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
  0.875
Bra015052
AT3G24530 (E=2e-260) | AAA-type ATPase family protein / ankyrin repeat family protein (482 aa)
     
  0.862
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
   
  0.848
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
   
  0.848
Bra005500
AT2G33385 (E=5e-065) arpc2b | arpc2b (actin-related protein C2B); structural molecule (319 aa)
         
  0.697
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
       
 
  0.684
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
     
  0.632
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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