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Bra003426 protein (Brassica rapa) - STRING interaction network
"Bra003426" - AT3G60750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003426AT3G60750 (E=4e-140) | transketolase, putative (462 aa)    
Predicted Functional Partners:
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.977
Bra023410
AT5G13420 (E=2e-201) | transaldolase, putative (440 aa)
 
  0.962
Bra019748
AT1G12230 (E=2e-195) | transaldolase, putative (409 aa)
   
  0.962
Bra008831
AT5G13420 (E=6e-201) | transaldolase, putative (439 aa)
 
  0.962
Bra006197
AT5G13420 (E=5e-198) | transaldolase, putative (437 aa)
 
  0.962
Bra029310
AT5G61410 (E=5e-028) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (77 aa)
   
  0.943
Bra027631
AT3G01850 (E=2e-117) | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (281 aa)
   
  0.943
Bra012963
AT5G61410 (E=1e-133) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (282 aa)
   
  0.943
Bra012962
AT5G61410 (E=2e-076) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (231 aa)
   
  0.943
Bra009244
AT5G61410 (E=1e-137) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (275 aa)
   
  0.943
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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