STRINGSTRING
Bra003431 protein (Brassica rapa) - STRING interaction network
"Bra003431" - AT3G60890 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003431AT3G60890 (E=5e-038) ZPR2 | ZPR2 (LITTLE ZIPPER 2); protein binding (103 aa)    
Predicted Functional Partners:
Bra005285
AT2G36300 (E=2e-089) | integral membrane Yip1 family protein (256 aa)
           
  0.511
Bra028532
AT3G52770 (E=5e-011) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (70 aa)
           
  0.497
Bra019649
AT3G52770 (E=2e-008) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (70 aa)
           
  0.497
Bra006946
AT3G52770 (E=5e-010) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (69 aa)
           
  0.497
Bra005284
AT3G52770 (E=6e-008) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (71 aa)
           
  0.497
Bra002458
AT5G60690 (E=0.0) REV, IFL, IFL1 | REV (REVOLUTA); DNA binding / lipid binding / transcription factor (850 aa)
       
 
  0.449
Bra017249
AT3G52760 (E=4e-015) | integral membrane Yip1 family protein (108 aa)
           
  0.428
Bra023059
AT3G52770 (E=3e-009) ZPR3 | ZPR3 (LITTLE ZIPPER 3); protein binding (70 aa)
           
  0.402
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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