STRINGSTRING
Bra003434 protein (Brassica rapa) - STRING interaction network
"Bra003434" - AT3G61050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003434AT3G61050 (E=3e-226) NTMC2TYPE4, NTMC2T4 | NTMC2T4; lipid binding (505 aa)    
Predicted Functional Partners:
Bra009476
AT5G04220 (E=3e-282) SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3 | SYTC (544 aa)
         
0.631
Bra016478
AT1G20080 (E=4e-128) SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2 | SYTB (509 aa)
         
0.625
Bra015612
AT1G47550 (E=0.0) | unknown protein (1112 aa)
       
      0.613
Bra008282
AT1G76850 (E=3e-291) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1147 aa)
       
      0.604
Bra008281
AT1G76850 (E=4e-017) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (414 aa)
       
      0.604
Bra003706
AT1G76850 (E=0.0) SEC5A | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) (1082 aa)
       
      0.604
Bra031157
AT2G20990 (E=2e-304) SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | SYTA (SYNAPTOTAGMIN A) (541 aa)
     
 
0.594
Bra037232
AT2G18193 (E=2e-128) | AAA-type ATPase family protein (737 aa)
       
  0.575
Bra037951
AT5G49830 (E=1e-212) | LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source- NCBI BLink). (694 aa)
       
      0.562
Bra022506
AT5G49830 (E=0.0) | LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G10385.1); Has 257 Blast hits to 210 proteins in 83 species- Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 61; Plants - 56; Viruses - 2; Other Eukaryotes - 5 (source- NCBI BLink). (740 aa)
       
      0.562
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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