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Bra003437.1-P protein (Brassica rapa) - STRING interaction network
"Bra003437.1-P" - AT3G61110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003437.1-PAT3G61110 (E=8e-037) ARS27A | ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome (84 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra020369
AT2G17360 (E=1e-129) | 40S ribosomal protein S4 (RPS4A) (301 aa)
   
  0.999
Bra028708
AT2G17360 (E=7e-136) | 40S ribosomal protein S4 (RPS4A) (262 aa)
   
  0.999
Bra005923
AT2G17360 (E=3e-133) | 40S ribosomal protein S4 (RPS4A) (279 aa)
   
  0.999
Bra020098
AT5G20290 (E=4e-090) | 40S ribosomal protein S8 (RPS8A) (226 aa)
     
  0.999
Bra006553
AT5G20290 (E=5e-088) | 40S ribosomal protein S8 (RPS8A) (289 aa)
     
  0.999
Bra002290
AT5G20290 (E=4e-087) | 40S ribosomal protein S8 (RPS8A) (227 aa)
     
  0.999
Bra016981
AT2G40610 (E=5e-124) ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11 | ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) (786 aa)
     
  0.999
Bra037884
AT1G34030 (E=1e-074) | 40S ribosomal protein S18 (RPS18B) (187 aa)
     
  0.999
Bra034447.1-P
AT1G34030 (E=8e-075) | 40S ribosomal protein S18 (RPS18B) (152 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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