STRINGSTRING
Bra003447 protein (Brassica rapa) - STRING interaction network
"Bra003447" - AT3G61350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003447AT3G61350 (E=1e-142) SKIP4 | SKIP4 (SKP1 INTERACTING PARTNER 4) (359 aa)    
Predicted Functional Partners:
Bra014813
AT3G54480 (E=5e-126) SKIP5, SKP5 | SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) (292 aa)
           
  0.553
Bra007074
AT3G54480 (E=1e-123) SKIP5, SKP5 | SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5) (270 aa)
           
  0.553
Bra037120
AT5G67250 (E=1e-223) SKIP2, VFB4 | SKIP2 (SKP1/ASK1 INTERACTING PROTEIN 2); ubiquitin-protein ligase (526 aa)
         
  0.494
Bra021653
AT2G30600 (E=0.0) | BTB/POZ domain-containing protein (799 aa)
     
 
  0.432
Bra015086
AT3G24800 (E=2e-094) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (378 aa)
         
  0.401
Bra013241
AT3G24800 (E=4e-105) PRT1 | PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase (390 aa)
         
  0.401
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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