STRINGSTRING
Bra003451 protein (Brassica rapa) - STRING interaction network
"Bra003451" - AT3G61470 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003451AT3G61470 (E=2e-129) LHCA2 | LHCA2; chlorophyll binding (259 aa)    
Predicted Functional Partners:
Bra010774
AT1G30380 (E=2e-057) PSAK | PSAK (photosystem I subunit K) (130 aa)
     
 
  0.966
Bra032384
AT1G30380 (E=1e-055) PSAK | PSAK (photosystem I subunit K) (131 aa)
     
 
  0.958
Bra031427
AT1G61520 (E=1e-138) LHCA3 | LHCA3; chlorophyll binding (273 aa)
     
 
0.937
Bra027083
AT1G61520 (E=5e-132) LHCA3 | LHCA3; chlorophyll binding (271 aa)
     
 
0.937
Bra016522
AT1G19150 (E=2e-129) LHCA6, LHCA2*1 | LHCA6; chlorophyll binding (266 aa)
     
 
0.881
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
     
 
  0.861
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
     
 
  0.857
Bra014908
AT1G31330 (E=3e-103) PSAF | PSAF (photosystem I subunit F) (217 aa)
     
 
  0.857
Bra034911
AT4G12800 (E=1e-099) PSAL | PSAL (photosystem I subunit L) (219 aa)
     
 
  0.853
Bra032672
AT4G12800 (E=1e-092) PSAL | PSAL (photosystem I subunit L) (219 aa)
     
 
  0.853
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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