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Bra003453 protein (Brassica rapa) - STRING interaction network
"Bra003453" - AT3G61530 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003453AT3G61530 (E=4e-175) PANB2 | PANB2; 3-methyl-2-oxobutanoate hydroxymethyltransferase ; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is tranferred onto alpha-ketoisovalerate to form ketopantoate (347 aa)    
Predicted Functional Partners:
Bra037457
AT5G48840 (E=1e-135) PANC, PTS, ATPTS | PANC (ARABIDOPSIS HOMOLOG OF BACTERIAL PANC); pantoate-beta-alanine ligase/ protein homodimerization (317 aa)
 
 
  0.941
Bra028367
AT3G23940 (E=0.0) | dehydratase family (609 aa)
         
  0.909
Bra015023
AT3G23940 (E=1e-314) | dehydratase family (611 aa)
         
  0.909
Bra029966
AT3G49680 (E=4e-199) ATBCAT-3, BCAT3 | BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (414 aa)
       
  0.905
Bra019963
AT1G10070 (E=2e-193) ATBCAT-2 | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (385 aa)
       
  0.905
Bra018463
AT1G10070 (E=2e-184) ATBCAT-2 | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2); branched-chain-amino-acid transaminase/ catalytic (377 aa)
       
  0.905
Bra017964
AT3G49680 (E=4e-201) ATBCAT-3, BCAT3 | BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3); branched-chain-amino-acid transaminase/ catalytic (410 aa)
       
  0.905
Bra011157
AT4G30000 (E=6e-256) | dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative (525 aa)
         
  0.755
Bra014235
AT1G50090 (E=5e-170) | aminotransferase class IV family protein (360 aa)
       
  0.736
Bra037978
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (742 aa)
         
  0.713
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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