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Bra003457 protein (Brassica rapa) - STRING interaction network
"Bra003457" - AT3G61580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003457AT3G61580 (E=7e-250) | delta-8 sphingolipid desaturase (SLD1) (449 aa)    
Predicted Functional Partners:
Bra019665
AT1G14290 (E=5e-143) SBH2 | SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase (261 aa)
     
   
  0.551
Bra001740
AT3G19260 (E=7e-138) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
           
  0.541
Bra034777
AT3G12120 (E=2e-215) FAD2 | FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase/ omega-6 fatty acid desaturase (384 aa)
   
   
  0.508
Bra014390
AT3G62830 (E=1e-232) UXS2, ATUXS2, AUD1 | AUD1; UDP-glucuronate decarboxylase/ catalytic/ dTDP-glucose 4,6-dehydratase (437 aa)
           
  0.503
Bra006462
AT5G18480 (E=6e-248) PGSIP6 | PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (535 aa)
           
  0.499
Bra032439
AT1G06080 (E=4e-176) ADS1 | ADS1 (DELTA 9 DESATURASE 1); oxidoreductase (303 aa)
     
   
  0.489
Bra032438
AT1G06090 (E=9e-163) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra032437
AT1G06090 (E=7e-159) | fatty acid desaturase family protein (300 aa)
     
   
  0.489
Bra030650
AT1G06360 (E=4e-137) | fatty acid desaturase family protein (299 aa)
     
   
  0.489
Bra030649
AT1G06360 (E=1e-136) | fatty acid desaturase family protein (301 aa)
     
   
  0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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