STRINGSTRING
Bra003462 protein (Brassica rapa) - STRING interaction network
"Bra003462" - AT2G46310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003462AT2G46310 (E=1e-060) CRF5 | CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor (283 aa)    
Predicted Functional Partners:
Bra024737
AT1G25540 (E=0.0) PFT1 | PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator (902 aa)
       
      0.505
Bra011001
AT1G25540 (E=3e-301) PFT1 | PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator (832 aa)
       
      0.505
Bra033992
AT1G67550 (E=0.0) URE | URE (UREASE); urease (835 aa)
           
  0.453
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]