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Bra003466 protein (Brassica rapa) - STRING interaction network
"Bra003466" - AT3G61710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003466AT3G61710 (E=8e-133) ATATG6 | autophagy protein Apg6 family (748 aa)    
Predicted Functional Partners:
Bra027152
AT1G60490 (E=0.0) ATVPS34, VPS34 | ATVPS34; 1-phosphatidylinositol-3-kinase/ binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor (712 aa)
     
  0.995
Bra011104
AT4G29380 (E=0.0) | protein kinase family protein / WD-40 repeat family protein (1477 aa)
     
  0.985
Bra011114
AT4G29380 (E=2e-100) | protein kinase family protein / WD-40 repeat family protein (804 aa)
     
  0.985
Bra024655
AT4G29380 (E=8e-035) | protein kinase family protein / WD-40 repeat family protein (352 aa)
     
  0.984
Bra022901
AT2G32760 (E=3e-170) | unknown protein (352 aa)
     
  0.975
Bra021811
AT2G32740 (E=5e-217) | exostosin family protein (809 aa)
     
  0.972
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
       
 
  0.966
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
       
 
  0.966
Bra039647
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2452 aa)
     
  0.930
Bra018828
AT1G50030 (E=0.0) TOR | TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (2435 aa)
     
  0.930
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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