STRINGSTRING
Bra003467 protein (Brassica rapa) - STRING interaction network
"Bra003467" - AT3G61740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003467AT3G61740 (E=0.0) SDG14, ATX3 | SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (1035 aa)    
Predicted Functional Partners:
Bra037784
AT5G64610 (E=3e-237) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (438 aa)
     
  0.992
Bra024313
AT5G64610 (E=4e-027) HAM1 | HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (122 aa)
     
  0.992
Bra009399
AT5G09740 (E=3e-249) HAM2 | HAM2 (histone acetyltransferase of the MYST family 2); H3/H4 histone acetyltransferase/ histone acetyltransferase/ nucleic acid binding / zinc ion binding (442 aa)
     
  0.992
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.986
Bra018984
AT1G52740 (E=1e-068) HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA binding (135 aa)
       
  0.975
Bra018984.1-P
AT1G52740 (E=1e-068) HTA9 | HTA9 (HISTONE H2A PROTEIN 9); DNA binding (135 aa)
       
  0.975
Bra014808
AT3G54560 (E=2e-062) HTA11 | HTA11; DNA binding (136 aa)
       
  0.975
Bra007080
AT3G54560 (E=1e-062) HTA11 | HTA11; DNA binding (136 aa)
       
  0.975
Bra003188
AT3G54560 (E=2e-055) HTA11 | HTA11; DNA binding (138 aa)
       
  0.975
Bra000097
AT3G54560 (E=2e-050) HTA11 | HTA11; DNA binding (134 aa)
       
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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