STRINGSTRING
Bra003469 protein (Brassica rapa) - STRING interaction network
"Bra003469" - AT3G61760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003469AT3G61760 (E=4e-287) ADL1B | ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B); GTP binding / GTPase (575 aa)    
Predicted Functional Partners:
Bra016455
AT1G20760 (E=5e-214) | calcium-binding EF hand family protein (1135 aa)
     
  0.974
Bra034268
AT3G57090 (E=3e-022) BIGYIN, FIS1A | BIGYIN; binding (105 aa)
       
  0.899
Bra023375
AT5G12390 (E=7e-055) FIS1B | FIS1B (FISSION 1B); binding (169 aa)
       
  0.899
Bra008891
AT5G12390 (E=4e-061) FIS1B | FIS1B (FISSION 1B); binding (171 aa)
       
  0.899
Bra007301
AT3G57090 (E=1e-061) BIGYIN, FIS1A | BIGYIN; binding (170 aa)
       
  0.899
Bra017933
AT1G21630 (E=5e-305) | calcium-binding EF hand family protein (1233 aa)
     
  0.845
Bra017929
AT1G21570 (E=2e-227) | zinc finger (CCCH-type) family protein (1001 aa)
     
  0.845
Bra016413
AT1G21630 (E=0.0) | calcium-binding EF hand family protein (1140 aa)
     
  0.845
Bra034864
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1488 aa)
     
  0.784
Bra034166
AT3G11130 (E=0.0) | clathrin heavy chain, putative (1448 aa)
     
  0.784
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (6%) [HD]