STRINGSTRING
Bra003474 protein (Brassica rapa) - STRING interaction network
"Bra003474" - AT3G61800 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003474AT3G61800 (E=5e-252) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF2043 (InterPro-IPR018610), ENTH/VHS (InterPro-IPR008942); Has 252 Blast hits to 225 proteins in 76 species- Archae - 2; Bacteria - 18; Metazoa - 106; Fungi - 14; Plants - 26; Viruses - 2; Other Eukaryotes - 84 (source- NCBI BLink). (667 aa)    
Predicted Functional Partners:
Bra024192
AT2G18760 (E=0.0) CHR8 | CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase/ nucleic acid binding (1161 aa)
     
 
  0.699
Bra032544
AT1G03750 (E=0.0) CHR9 | SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding (1643 aa)
         
  0.698
Bra024250
AT5G63950 (E=9e-205) CHR24 | CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid binding (1153 aa)
         
  0.698
Bra038317
AT1G55750 (E=8e-230) | transcription factor-related (558 aa)
     
  0.693
Bra025318
AT3G28030 (E=0.0) UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3); DNA binding / catalytic/ endonuclease/ nuclease/ single-stranded DNA binding (1458 aa)
     
 
  0.603
Bra032850
AT1G27840 (E=6e-233) ATCSA-1 | transducin family protein / WD-40 repeat family protein (450 aa)
       
  0.586
Bra041162
AT3G49600 (E=9e-074) UBP26, SUP32, ATUBP26 | UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26); ubiquitin thiolesterase/ ubiquitin-specific protease (199 aa)
       
  0.573
Bra038685
AT3G11910 (E=0.0) UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease (1102 aa)
       
  0.573
Bra034802
AT3G11910 (E=0.0) UBP13 | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13); ubiquitin thiolesterase/ ubiquitin-specific protease (1115 aa)
       
  0.573
Bra028727
AT5G06600 (E=0.0) UBP12 | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease (1138 aa)
       
  0.573
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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