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Bra003486 protein (Brassica rapa) - STRING interaction network
"Bra003486" - AT3G62120 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
Bra003486AT3G62120 (E=5e-209) | tRNA synthetase class II (G, H, P and S) family protein (461 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.998
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.998
Bra031675
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1156 aa)
   
  0.981
Bra020007
AT1G09620 (E=0.0) | ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding (1048 aa)
   
  0.981
Bra025459
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1175 aa)
     
  0.978
Bra019389
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1097 aa)
     
  0.978
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
   
  0.976
Bra024759
AT1G25350 (E=2e-197) OVA9 | OVA9 (ovule abortion 9); glutamine-tRNA ligase (727 aa)
   
  0.971
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
   
 
  0.965
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
   
 
    0.963
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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