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Bra003498 protein (Brassica rapa) - STRING interaction network
"Bra003498" - AT5G61310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003498AT5G61310 (E=1e-022) | cytochrome c oxidase subunit Vc, putative / COX5C, putative (64 aa)    
Predicted Functional Partners:
Bra011788
AT4G37830 (E=2e-039) | cytochrome c oxidase-related (102 aa)
     
   
  0.442
Bra010615
AT4G37830 (E=5e-052) | cytochrome c oxidase-related (102 aa)
     
   
  0.442
Bra031411
AT1G03070 (E=4e-014) | glutamate binding (187 aa)
     
   
  0.409
Bra027224
AT3G15640 (E=4e-053) | cytochrome c oxidase family protein (124 aa)
     
   
  0.409
Bra027223
AT3G15640 (E=1e-039) | cytochrome c oxidase family protein (104 aa)
     
   
  0.409
Bra027222
AT3G15640 (E=5e-027) | cytochrome c oxidase family protein (152 aa)
     
   
  0.409
Bra021123
AT3G15640 (E=8e-064) | cytochrome c oxidase family protein (175 aa)
     
   
  0.409
Bra001601
AT3G15640 (E=7e-027) | cytochrome c oxidase family protein (126 aa)
     
   
  0.409
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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