STRINGSTRING
Bra003500 protein (Brassica rapa) - STRING interaction network
"Bra003500" - AT3G62420 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003500AT3G62420 (E=1e-056) ATBZIP53 | ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor (134 aa)    
Predicted Functional Partners:
Bra000102
AT3G54620 (E=2e-055) ATBZIP25, BZO2H4, BZIP25 | BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (366 aa)
       
 
  0.706
Bra036251
AT4G02640 (E=3e-126) BZO2H1, ATBZIP10 | BZO2H1; DNA binding / protein heterodimerization/ sequence-specific DNA binding / transcription factor (394 aa)
       
 
0.633
Bra007083
AT3G54620 (E=5e-106) ATBZIP25, BZO2H4, BZIP25 | BZIP25 (BASIC LEUCINE ZIPPER 25); protein heterodimerization/ transcription factor (384 aa)
       
 
0.560
Bra024478
AT2G18160 (E=1e-041) ATBZIP2, GBF5 | ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor (155 aa)
     
 
0.552
Bra039631
AT2G18160 (E=1e-065) ATBZIP2, GBF5 | ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor (168 aa)
     
 
0.551
Bra037235
AT2G18160 (E=6e-062) ATBZIP2, GBF5 | ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2); DNA binding / protein heterodimerization/ transcription factor (168 aa)
     
 
0.551
Bra010010
AT5G28770 (E=8e-106) BZO2H3 | BZO2H3; DNA binding / protein heterodimerization/ transcription factor (314 aa)
       
 
0.543
Bra020620
AT5G28770 (E=5e-106) BZO2H3, AtbZIP63 | BZO2H3; DNA binding / protein heterodimerization/ transcription factor (315 aa)
       
 
0.542
Bra003755
AT1G75390 (E=2e-060) AtbZIP44 | AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor (179 aa)
       
 
0.533
Bra008192
AT1G75390 (E=8e-034) AtbZIP44 | AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44); DNA binding / protein heterodimerization/ transcription factor (165 aa)
       
 
0.532
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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