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Bra003512 protein (Brassica rapa) - STRING interaction network
"Bra003512" - AT2G47610 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003512AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)    
Predicted Functional Partners:
Bra000894
AT1G61580 (E=2e-061) RPL3B, ARP2 | RPL3B (R-PROTEIN L3 B); structural constituent of ribosome (999 aa)
   
  0.999
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra029857
AT3G10620 (E=6e-093) ATNUDX26 | ATNUDX26 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 26); bis(5’-adenosyl)-pentaphosphatase/ bis(5’-nucleosyl)-tetraphosphatase (asymmetrical) (336 aa)
   
  0.999
Bra028546
AT3G53020 (E=2e-055) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (177 aa)
   
  0.999
Bra019632
AT3G53020 (E=2e-055) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (192 aa)
   
  0.999
Bra006969
AT3G53020 (E=7e-055) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (171 aa)
   
  0.999
Bra005258
AT3G53020 (E=2e-059) STV1, RPL24B, RPL24 | STV1 (SHORT VALVE1); structural constituent of ribosome (162 aa)
   
  0.999
Bra020572
AT4G14960 (E=4e-115) TUA6 | TUA6; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (468 aa)
   
  0.999
Bra040533
AT3G05590 (E=1e-098) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome (259 aa)
   
  0.999
Bra039423
AT3G05590 (E=1e-020) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome (118 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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