STRINGSTRING
Bra003514 protein (Brassica rapa) - STRING interaction network
"Bra003514" - AT3G62900 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003514AT3G62900 (E=0.0) | zinc ion binding (1321 aa)    
Predicted Functional Partners:
Bra019362
AT4G22740 (E=5e-058) | glycine-rich protein (320 aa)
           
  0.544
Bra020833
AT4G22740 (E=6e-071) | glycine-rich protein (297 aa)
           
  0.514
Bra012320
AT1G22310 (E=7e-066) MBD8 | MBD8; methyl-CpG binding (340 aa)
           
  0.505
Bra007371
AT3G57980 (E=2e-108) | DNA-binding bromodomain-containing protein (570 aa)
     
   
  0.419
Bra018847
AT1G50410 (E=0.0) | SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein (960 aa)
     
   
  0.416
Bra004831
AT3G60110 (E=1e-087) | DNA binding (623 aa)
           
  0.406
Bra040518
AT3G01460 (E=0.0) MBD9, ATMBD9 | MBD9; DNA binding / methyl-CpG binding (2143 aa)
     
   
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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