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Bra003522 protein (Brassica rapa) - STRING interaction network
"Bra003522" - AT3G63080 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003522AT3G63080 (E=7e-082) ATGPX5, MEE42 | ATGPX5 (glutathione peroxidase 5); glutathione peroxidase (237 aa)    
Predicted Functional Partners:
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
   
  0.922
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
   
  0.922
Bra003241
AT3G56460 (E=7e-163) | oxidoreductase, zinc-binding dehydrogenase family protein (467 aa)
   
 
  0.817
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
  0.798
Bra040596
AT3G02730 (E=5e-085) TRXF1, ATF1 | TRXF1 (THIOREDOXIN F-TYPE 1); enzyme activator (181 aa)
   
  0.787
Bra040318
AT5G39950 (E=3e-045) ATTRX2, ATH2, ATTRXH2, TRXH2 | ATTRX2 (THIOREDOXIN 2); oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (130 aa)
   
  0.787
Bra040287
AT3G06730 (E=3e-087) | thioredoxin family protein (180 aa)
   
  0.787
Bra040055
AT3G08710 (E=7e-068) ATH9 | ATH9 (thioredoxin H-type 9) (137 aa)
   
  0.787
Bra036839
AT3G51030 (E=8e-058) ATTRX1, ATTRX H1 | ATTRX1; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (114 aa)
   
  0.787
Bra036335
AT1G45145 (E=1e-053) ATTRX5, ATH5, LIV1 | ATTRX5; oxidoreductase, acting on sulfur group of donors, disulfide as acceptor (117 aa)
   
  0.787
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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