STRINGSTRING
Bra003528 protein (Brassica rapa) - STRING interaction network
"Bra003528" - AT1G79760 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003528AT1G79760 (E=3e-109) DTA4 | DTA4 (DOWNSTREAM TARGET OF AGL15-4) (315 aa)    
Predicted Functional Partners:
Bra018738
AT1G48580 (E=4e-059) | unknown protein (455 aa)
           
  0.582
Bra001763
AT3G19920 (E=5e-179) | unknown protein (416 aa)
           
  0.582
Bra037180
AT5G66230 (E=6e-098) | unknown protein (322 aa)
           
  0.553
Bra022467
AT3G19920 (E=2e-152) | unknown protein (454 aa)
           
  0.550
Bra004942
AT2G45830 (E=2e-242) DTA2 | DTA2 (DOWNSTREAM TARGET OF AGL15 2) (638 aa)
           
  0.477
Bra010619
AT4G37900 (E=2e-286) | glycine-rich protein (784 aa)
           
  0.474
Bra007590
AT3G61270 (E=5e-247) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Lipopolysaccharide-modifying protein (InterPro-IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro-IPR008539); BEST Arabidopsis thaliana protein match is- DTA2 (DOWNSTREAM TARGET OF AGL15 2) (TAIR-AT2G45830.1); Has 461 Blast hits to 457 proteins in 95 species- Archae - 0; Bacteria - 32; Metazoa - 201; Fungi - 83; Plants - 117; Viruses - 4; Other Eukaryotes - 24 (source- NCBI BLink). (491 aa)
           
  0.448
Bra003444
AT3G61270 (E=3e-250) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Lipopolysaccharide-modifying protein (InterPro-IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro-IPR008539); BEST Arabidopsis thaliana protein match is- DTA2 (DOWNSTREAM TARGET OF AGL15 2) (TAIR-AT2G45830.1); Has 461 Blast hits to 457 proteins in 95 species- Archae - 0; Bacteria - 32; Metazoa - 201; Fungi - 83; Plants - 117; Viruses - 4; Other Eukaryotes - 24 (source- NCBI BLink). (498 aa)
           
  0.448
Bra011785
AT4G37780 (E=4e-114) MYB87, ATMYB87 | MYB87 (MYB DOMAIN PROTEIN 87); DNA binding / transcription factor (305 aa)
           
  0.414
Bra036316
AT4G01700 (E=3e-135) | chitinase, putative (279 aa)
           
  0.403
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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