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Bra003534 protein (Brassica rapa) - STRING interaction network
"Bra003534" - AT1G79830 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003534AT1G79830 (E=0.0) GC5 | GC5 (golgin candidate 5); protein binding (1415 aa)    
Predicted Functional Partners:
Bra000355
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.765
Bra037641
AT2G44610 (E=2e-101) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.647
80A08_22
AT5G10260 (E=3e-100) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (206 aa)
     
 
  0.647
Bra006054
AT5G10260 (E=7e-106) AtRABH1e | AtRABH1e (Arabidopsis Rab GTPase homolog H1e); GTP binding (207 aa)
     
 
  0.647
Bra004850
AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)
     
 
  0.647
Bra017875
AT4G39890 (E=4e-096) AtRABH1c | AtRABH1c (Arabidopsis Rab GTPase homolog H1c); GTP binding / protein binding (258 aa)
     
 
  0.641
Bra025283
AT3G27530 (E=0.0) GC6 | GC6 (golgin candidate 6); binding / protein transporter (919 aa)
     
   
  0.571
Bra006100
AT5G11490 (E=0.0) | adaptin family protein ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (840 aa)
     
    0.566
Bra035228
AT4G11380 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (899 aa)
     
    0.559
Bra019302
AT4G23460 (E=0.0) | beta-adaptin, putative ; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (880 aa)
       
    0.558
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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