STRINGSTRING
Bra003535 protein (Brassica rapa) - STRING interaction network
"Bra003535" - AT1G79840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003535AT1G79840 (E=0.0) GL2 | GL2 (GLABRA 2); DNA binding / transcription factor (750 aa)    
Predicted Functional Partners:
Bra025589
AT5G40330 (E=3e-068) MYB23, ATMYB23, ATMYBRTF | MYB23 (MYB DOMAIN PROTEIN 23); DNA binding / protein binding / transcription factor (255 aa)
       
 
  0.798
Bra008740
AT5G14750 (E=3e-094) WER, ATMYB66, WER1 | ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator (197 aa)
       
 
  0.665
Bra025508
AT5G41315 (E=2e-303) GL3, MYC6.2 | GL3 (GLABROUS 3); protein binding / transcription factor (629 aa)
           
  0.630
Bra009770
AT5G24520 (E=1e-176) TTG1, TTG | TTG1 (TRANSPARENT TESTA GLABRA 1); DNA binding / nucleotide binding / protein binding (337 aa)
           
  0.630
Bra004539
AT2G46410 (E=3e-039) CPC | CPC (CAPRICE); DNA binding / transcription factor (85 aa)
           
  0.606
Bra027796
AT1G63650 (E=8e-300) EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (606 aa)
           
  0.605
Bra027653
AT1G63650 (E=2e-276) EGL3, EGL1, ATMYC-2 | EGL3 (ENHANCER OF GLABRA 3); DNA binding / transcription factor (596 aa)
           
  0.605
Bra019708
AT1G66470 (E=3e-111) | basic helix-loop-helix (bHLH) family protein (307 aa)
           
  0.577
Bra025311
AT3G27920 (E=3e-091) GL1, ATMYB0, ATGL1 | ATMYB0 (MYB DOMAIN PROTEIN 0); DNA binding / protein binding / transcription activator/ transcription factor (225 aa)
       
 
  0.553
Bra032635
AT1G01380 (E=7e-026) ETC1 | ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor (82 aa)
           
  0.548
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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