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Bra003536 protein (Brassica rapa) - STRING interaction network
"Bra003536" - AT1G79860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003536AT1G79860 (E=6e-234) ATROPGEF12, ROPGEF12, MEE64 | ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12); Rho guanyl-nucleotide exchange factor (513 aa)    
Predicted Functional Partners:
Bra040816
AT2G07040 (E=3e-231) ATPRK2A, PRK2A | PRK2A; ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (619 aa)
     
 
  0.953
Bra038892
AT2G17800 (E=9e-097) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
     
 
  0.618
Bra036819
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
     
 
  0.618
Bra012858
AT3G51300 (E=1e-097) ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1); GTP binding / GTPase activating protein binding / GTPase/ protein binding (197 aa)
     
 
  0.618
Bra008227
AT1G75840 (E=2e-104) ARAC5, ATGP3, ROP4, ATROP4 | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase (196 aa)
       
 
  0.492
Bra038255
AT3G20190 (E=3e-285) | leucine-rich repeat transmembrane protein kinase, putative (777 aa)
     
 
  0.477
Bra035538
AT5G35390 (E=1e-265) | leucine-rich repeat transmembrane protein kinase, putative (699 aa)
     
 
  0.477
Bra030482
AT1G50610 (E=2e-293) | leucine-rich repeat transmembrane protein kinase, putative (686 aa)
     
 
  0.477
Bra014257
AT3G20190 (E=4e-234) | leucine-rich repeat transmembrane protein kinase, putative (661 aa)
     
 
  0.477
Bra001779
AT3G20190 (E=2e-299) | leucine-rich repeat transmembrane protein kinase, putative (681 aa)
     
 
  0.477
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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