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Bra003537 protein (Brassica rapa) - STRING interaction network
"Bra003537" - AT1G79870 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003537AT1G79870 (E=1e-140) | oxidoreductase family protein (313 aa)    
Predicted Functional Partners:
Bra037207
AT2G13360 (E=1e-217) AGT, AGT1 | AGT (ALANINE-GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase (401 aa)
   
 
  0.960
Bra013148
AT2G13360 (E=3e-217) AGT, AGT1 | AGT (ALANINE-GLYOXYLATE AMINOTRANSFERASE); alanine-glyoxylate transaminase/ serine-glyoxylate transaminase/ serine-pyruvate transaminase (401 aa)
   
 
  0.960
Bra021556
AT3G14420 (E=1e-192) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (367 aa)
   
 
  0.960
Bra012602
AT4G18360 (E=5e-204) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (368 aa)
   
 
  0.960
Bra021535
AT3G14130 (E=2e-181) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (363 aa)
   
 
  0.957
Bra021533
AT3G14130 (E=1e-170) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (363 aa)
   
 
  0.957
Bra028813
AT5G03860 (E=2e-314) MLS | MLS (MALATE SYNTHASE); malate synthase (561 aa)
     
 
  0.941
Bra024580
AT1G23310 (E=1e-269) GGT1, AOAT1 | GGT1 (GLUTAMATE-GLYOXYLATE AMINOTRANSFERASE); L-alanine-2-oxoglutarate aminotransferase/ glycine-2-oxoglutarate aminotransferase (478 aa)
   
 
  0.915
Bra016353
AT1G23310 (E=3e-262) GGT1, AOAT1 | GGT1 (GLUTAMATE-GLYOXYLATE AMINOTRANSFERASE); L-alanine-2-oxoglutarate aminotransferase/ glycine-2-oxoglutarate aminotransferase (478 aa)
   
 
  0.915
Bra016202
AT1G70580 (E=5e-275) AOAT2, GGT2 | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); L-alanine-2-oxoglutarate aminotransferase/ glycine-2-oxoglutarate aminotransferase (482 aa)
   
 
  0.915
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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