STRINGSTRING
Bra003540 protein (Brassica rapa) - STRING interaction network
"Bra003540" - AT1G79950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003540AT1G79950 (E=0.0) | helicase-related (970 aa)    
Predicted Functional Partners:
Bra040106
AT4G17020 (E=2e-242) | transcription factor-related (452 aa)
     
  0.940
Bra030602
AT1G05055 (E=6e-214) ATGTF2H2, GTF2H2 | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor (422 aa)
     
  0.939
Bra038317
AT1G55750 (E=8e-230) | transcription factor-related (558 aa)
     
  0.938
Bra025913
AT1G18340 (E=4e-106) | basal transcription factor complex subunit-related (268 aa)
     
  0.936
Bra024041
AT4G30820 (E=3e-067) | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (185 aa)
       
  0.936
Bra010271
AT4G30820 (E=1e-067) | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (182 aa)
       
  0.936
Bra013383
AT4G20340 (E=2e-116) | RNA polymerase II transcription factor/ transcription initiation factor (454 aa)
     
  0.935
Bra031013
AT1G18040 (E=2e-201) CDKD1;3, AT;CDCKD;3, CAK2AT | CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase (377 aa)
     
  0.934
Bra016572
AT1G18040 (E=2e-208) CDKD1;3, AT;CDCKD;3, CAK2AT | CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase (393 aa)
     
  0.934
Bra015974
AT1G73690 (E=1e-198) CDKD1;1, AT;CDKD;1, CAK3AT | CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (397 aa)
     
  0.934
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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