STRINGSTRING
Bra003543 protein (Brassica rapa) - STRING interaction network
"Bra003543" - AT1G80000 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003543AT1G80000 (E=1e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- CASC3/Barentsz eIF4AIII binding (InterPro-IPR018545); BEST Arabidopsis thaliana protein match is- glycine-rich protein (TAIR-AT1G15280.2); Has 2243 Blast hits to 1704 proteins in 212 species- Archae - 16; Bacteria - 151; Metazoa - 691; Fungi - 281; Plants - 163; Viruses - 64; Other Eukaryotes - 877 (source- NCBI BLink). (574 aa)    
Predicted Functional Partners:
Bra025115
AT2G03500 (E=2e-173) | myb family transcription factor (423 aa)
       
      0.904
Bra019858
AT1G11400 (E=4e-038) PYM | PYM (Partner of Y14-Mago); protein binding (227 aa)
           
  0.654
Bra016837
AT1G11400 (E=1e-060) PYM | PYM (Partner of Y14-Mago); protein binding (212 aa)
           
  0.654
Bra026548
AT2G03500 (E=3e-097) | myb family transcription factor (422 aa)
       
      0.614
Bra030436
AT1G51510 (E=1e-066) Y14 | Y14; RNA binding / protein binding (200 aa)
       
  0.612
Bra018912
AT1G51510 (E=2e-067) Y14 | Y14; RNA binding / protein binding (199 aa)
       
  0.612
Bra014288
AT1G51510 (E=7e-074) Y14 | Y14; RNA binding / protein binding (200 aa)
       
  0.612
Bra032887
AT1G28260 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- SMG7 (TAIR-AT5G19400.1); Has 341 Blast hits to 340 proteins in 87 species- Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 71; Plants - 35; Viruses - 0; Other Eukaryotes - 10 (source- NCBI BLink). (856 aa)
           
  0.541
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
           
  0.541
Bra039309
AT2G45850 (E=1e-118) | DNA-binding family protein (341 aa)
       
      0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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