STRINGSTRING
Bra003552 protein (Brassica rapa) - STRING interaction network
"Bra003552" - AT4G24940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra003552AT4G24940 (E=4e-044) SAE1A, AT-SAE1-1, ATSAE1A | SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme (155 aa)    
Predicted Functional Partners:
Bra031191
AT2G21470 (E=0.0) SAE2, ATSAE2, EMB2764 | SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (630 aa)
     
  0.982
Bra030297
AT2G21470 (E=0.0) SAE2, ATSAE2, EMB2764 | SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (627 aa)
     
  0.982
Bra014602
AT3G57870 (E=6e-092) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
     
  0.978
Bra014406
AT3G57870 (E=6e-081) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
     
  0.978
Bra007363
AT3G57870 (E=1e-077) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
     
  0.978
Bra003301
AT3G57870 (E=7e-078) AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | SCE1 (SUMO CONJUGATION ENZYME 1); SUMO ligase (160 aa)
     
  0.978
Bra037466
AT5G48690 (E=2e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro-IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro-IPR015940), PUG (InterPro-IPR006567), UBA-like (InterPro-IPR009060); BEST Arabidopsis thaliana protein match is- ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR-AT1G04850.1); Has 6741 Blast hits to 4773 proteins in 362 spec [...] (413 aa)
     
  0.976
Bra035560
AT4G26840 (E=1e-044) SUM1, SUMO 1, SUMO1, ATSUMO1 | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag (142 aa)
     
  0.976
Bra026399
AT4G26840 (E=1e-047) SUM1, SUMO 1, SUMO1, ATSUMO1 | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1); protein binding / protein tag (100 aa)
     
  0.976
Bra025928
AT2G32765 (E=5e-022) SUM5, SUMO5, ATSUMO5 | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5); protein tag (107 aa)
     
  0.976
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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